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open access

Deep learning for peptide identification from metaproteomics datasets

Description: This article explores a proposed deep-learning-based algorithm called DeepFilter for improving peptide identifications from a collection of tandem mass spectra. The authors find that DeepFilter is believed to generalize properly to new, previously unseen peptide-spectrum-matches and can be readily applied in peptide identification from metaproteomics data.
Date: July 8, 2021
Creator: Feng, Shichao; Sterzenbach, Ryan & Guo, Xuan
Partner: UNT College of Engineering
open access

A New Citation Recommendation Strategy Based on Term Functions in Related Studies Section

Description: This article focuses on citation recommendation in the related studies section by applying the term function of a citation context, potentially improving the efficiency of writing a literature review. The citation recommendation strategy can be helpful for valuable citation discovery, semantic scientific retrieval, and automatic literature review generation.
Date: May 8, 2021
Creator: Chen, Haihua
Partner: UNT College of Information
open access

Effect of amorphous cellulose on the deformation behavior of cellulose composites: molecular dynamics simulation

Description: This article is a study aimed at predicting and enhancing the properties of the blend, as well as exploring the mechanism, of a polylactic acid (PLA)/amorphous cellulose composite system through molecular characterization. The static properties of the amorphous cellulose/PLA blend model and the mechanical response of the material under uniaxial tension were studied by molecular dynamics simulation to establish the structure–property relationship.
Date: June 8, 2021
Creator: Ren, Zechun; Guo, Rui; Zhou, Xinyuan; Bi, Hongjie; Jia, Xin; Xu, Min et al.
Partner: UNT College of Engineering
open access

POSMM: an efficient alignment-free metagenomic profiler that complements alignment-based profiling

Description: Article presents POSMM, Python-Optimized Standard Markov Model classifier, which is a new incarnation of the Markov model approach to metagenomic sequence analysis. The authors claim that by combining POSMM with ultrafast classifiers such as Kraken2, their complementary strengths can be leveraged to produce higher overall accuracy in metagenomic sequence classification than by either as a standalone classifier. POSMM is a user-friendly and highly adaptable tool designed for broad use by the met… more
Date: March 8, 2023
Creator: Burks, David J.; Pusadkar, Vaidehi & Azad, Rajeev K.
Partner: UNT College of Science
open access

Growth of Highly-Ordered Metal Nanoparticle Arrays in the Dimpled Pores of an Anodic Aluminum Oxide Template

Description: Article presents a reliable, scalable, and inexpensive technology for the fabrication of ordered arrays of metal nanoparticles with large areal coverage on various substrates. Using a simple model, the experimental results were interpreted and supported by numerical estimations.
Date: November 8, 2022
Creator: Farmer, Gavin; Abraham, James; Littler, Chris; Syllaios, A. J. & Philipose, Usha
Partner: UNT College of Science
open access

N-acylethanolamide metabolizing enzymes are upregulated in human neural progenitor-derived neurons exposed to sub-lethal oxidative stress

Description: Article is a study determining whether ReN cells, a superior cell model system for studying neurodevelopment, differentiation, and neuroprotection, express proteins involved in canonical eCB NAE signaling and whether oxidative stress can induce their expression. This study is a first step toward determining how oxidative stress affects CB1, CB2, FAAH, NAAA, and NAPE-PLD expression and their potential defense against oxidative stress.
Date: August 8, 2022
Creator: Duncan, Scott R.; Riordan, Sean M.; Hall, Conner W.; Payne, Andrew J.; Chapman, Kent Dean & Koulen, Peter
Partner: UNT College of Science
open access

Case report: Early-onset osteoporosis in a patient carrying a novel heterozygous variant of the WNT1 gene

Description: Article presents a case study of a 35 year-old Caucasian woman who experienced multiple vertebral fractures two months after her second pregnancy. The results suggest a potential role of heterozygous WNT1 variants in the pathogenesis of early-onset osteoporosis. The authors suggest that teriparatide is one of the most appropriate available therapies for such cases.
Date: August 8, 2022
Creator: Campopiano, Maria Cristina; Fogli, Antonella; Michelucci, Angela; Mazoni, Laura; Longo, Antonella; Borsari, Simona et al.
Partner: UNT College of Science
open access

Event-Driven Deep Learning for Edge Intelligence (EDL-EI)

Description: Article on deep-learning framework for edge intelligence EDL-EI (event-driven deep learning for edge intelligence). To verify the proposed framework, the authors include a case study of air-quality scenarios based for the most polluted cities in South Korea and China.
Date: September 8, 2021
Creator: Shah, Sayed Khushal; Tariq, Zeenat; Lee, Jeehwan & Lee, Yugyung
Partner: UNT College of Science
open access

Ion-exchange mechanisms and interfacial reaction kinetics during aqueous corrosion of sodium silicate glasses

Description: Article on the ion-exchange and associated interfacial reaction mechanisms of silicate glasses. This work reports findings that shed light on the complex ion-exchange mechanisms during glass hydration and enables more detailed understanding of the corrosion and glass-water interactions of silicate glasses which has the potential to impact both science and technology.
Date: April 8, 2021
Creator: Deng, Lu; Miyatani, Katsuaki; Suehara, Michinori; Amma, Shin-ichi; Ono, Madoka; Urata, Shingo et al.
Partner: UNT College of Engineering
open access

A theoretical study of M–M′ polar-covalent bonding in heterobimetallic multinuclear organometallic complexes of monovalent group 11 metal centres

Description: Article describes how complexes with closed-shell (d10–d10) interactions have been studied for their interesting luminescence properties in organic light-emitting diode (OLED) devices. The present computational study aims at understanding the chemical bonding/interactions in a series of molecules with unusually short metal–metal bond distances between monovalent coinage-metal (d10–d10) centres.
Date: February 8, 2023
Creator: Rabaâ, Hassan; Sundholm, Dage & Omary, Mohammad A.
Partner: UNT College of Science
open access

Broadband Absorption in Patterned Metal/Weakly-Absorbing-Spacer/Metal with Graded Photonic Super-Crystal

Description: Article studying high light absorption in two devices: a stack of Au-pattern/insulator/Au-film and a stack of Au-pattern/weakly-absorbing-material/Au-film where the Au-pattern was structured in graded photonic super-crystal. Multiple-band absorption, including one near 1500 nm, in a stack of Au-pattern/spacer/Au-film was observed.
Date: April 8, 2021
Creator: Kamau, Steve; Hassan, Safaa; Alnasser, Khadijah; Zhang, Hualiang; Cui, Jingbiao & Lin, Yuankun
Partner: University of North Texas
open access

Protein functional module identification method combining topological features and gene expression data

Description: Article conducting an intensive study on the problems of low recognition efficiency and noise in the overlapping structure of protein functional modules, based on topological characteristics of PPI network. Developing a protein function module recognition method ECTG based on Topological Features and Gene expression data for Protein Complex Identification. The experimental results show that the ECTG algorithm can detect protein functional modules better.
Date: June 8, 2021
Creator: Zhao, Zihao; Xu, Wenjun; Chen, Aiwen; Han, Yueyue; Xia, Shengrong; Xiang, ChuLei et al.
Partner: UNT College of Engineering
open access

Computing microRNA-gene interaction networks in pan-cancer using miRDriver

Description: This article is a study where the authors integrated the multi-omics datasets such as copy number aberration, DNA methylation, gene and microRNA expression to identify the signature microRNA-gene associations from frequently aberrated DNA regions across pan-cancer utilizing a LASSO-based regression approach.
Date: March 8, 2022
Creator: Bose, Banabithi; Moravec, Matthew & Bozdag, Serdar
Partner: UNT College of Engineering
open access

A self-powered wireless motion sensor based on a high-surface area reverse electrowetting-on-dielectric energy harvester

Description: Article presents a motion-sensing device with the capability of harvesting energy from low-frequency motion activities. Based on the high surface area reverse electrowetting-on-dielectric (REWOD) energy harvesting technique, mechanical modulation of the liquid generates an AC signal, which is modeled analytically and implemented in Matlab and COMSOL.
Date: March 8, 2022
Creator: Tasneem, Nishat Tarannum; Biswas, Dipon K.; Adhikari, Pashupati R.; Gunti, Avinash; Patwary, Adnan B.; Reid, Russell C. et al.
Partner: UNT College of Engineering
open access

Country Differences in Determinants of Behavioral Intention towards Sustainable Apparel Products

Description: This article explores determinants of behavioral intention toward sustainable apparel products (SAP). It examines both consumer characteristics (shopping values, consciousness of sustainability, perceived consumer effectiveness, and environmental knowledge) and marketing perspective (evaluation criteria of SAP) determinants for encouraging sustainable apparel consumption behaviors. Significant country differences emerge and validate that differentiated marketing strategies are required when tar… more
Date: January 8, 2021
Creator: Jung, Hye Jung; Oh, Kyung Wa & Kim, Haejung
Partner: UNT College of Merchandising, Hospitality and Tourism
open access

Ecological determinants of smart home ecosystems: A coopetition framework

Description: Article describing the strategic motivations and critical factors involved in the competition-based evolution of smart home ecosystems from early to growth phases, leading to a decision among the largest competitors to engage in coopetition.
Date: September 8, 2021
Creator: Struckell, Elisabeth; Ojha, Divesh; Patel, Pankaj C. & Dhir, Amandeep
Partner: UNT College of Business
open access

Exposure to diesel exhaust particles results in altered lung microbial profiles, associated with increased reactive oxygen species/reactive nitrogen species and inflammation, in C57Bl/6 wildtype mice on a high-fat diet

Description: Article investigating if the exposure to diesel exhaust particles (DEP) can alter commensal lung microbiota, thereby promoting alterations in the lung’s immune and inflammatory responses. This article also explores if diet contributes to the alteration of the commensal lung microbiome.
Date: January 8, 2021
Creator: Daniel, Sarah; Phillippi, Danielle; Schneider, Leah J.; Nguyen, Kayla N.; Mirpuri, Julie & Lund, Amie K.
Partner: UNT College of Science

Spectroscopic, structural, and strain-dependent analysis of suspended bulk WSe2 sheets

Description: Article utilizing Raman spectroscopy and photoluminescence (PL) spectroscopy to analyze the phononic and electronic parameters in suspended bulk WSe₂ sheets, fabricated utilizing photolithography and wet chemical etching. The findings of this work will be beneficial in analyzing thermal, optical, and mechanical properties of WSe₂ in a suspended platform for its application in electronic, thermoelectric, and mechanical sensors in the future.
Date: February 8, 2022
Creator: Bandyopadhyay, Avra S. & Kaul, Anupama
Partner: UNT College of Engineering
open access

Psychopathy and emotion dysregulation: More than meets the eye

Description: Article examines associations between self-reported emotion regulation (ER) and psychopathy.
Date: June 8, 2020
Creator: Neumann, Craig S.; Garofalo, Carlo; Kosson, David S. & Velotti, Patrizia
Partner: UNT College of Liberal Arts & Social Sciences
open access

Phononic crystal as a homogeneous viscous metamaterial

Description: Article develops a homogenization theory, representing the low-frequency limit for a phononic crystal of cylinders embedded in a viscous fluid.
Date: June 8, 2020
Creator: Krokhin, Arkadii A.; Zubov, Yu.; Ibarias, M. & Arriaga, J.
Partner: UNT College of Science
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